In
| Player | Team | Date | Fee |
|---|---|---|---|
| Jimmy Shepherd | Blackburn Rovers | 16 July 1959 | Free |
| Keith Webber | Barry Town | September 1959 | Amateur |
| Alan Shackleton | Leeds United | 11 September 1959 | £8,450 |
| Stan Edwards | Rhyl | 22 September 1959 | Amateur |
| Stan Harland | New Brighton | 30 November 1959 | £1,500 (+£1,000 add-ons) |
| Tommy Ring | Clyde | 19 January 1960 | £12,500 |
| Roy Vernon | Blackburn Rovers | 10 February 1960 | Exchange + £27,500 |
| Mickey Lill | Wolverhampton Wanderers | 18 February 1960 | £25,000 |
| Jimmy Gabriel | Dundee | 2 March 1960 | £30,000 |
| Total (initial fees only): | £104,950 | ||
- Keith Webber (Barry Town) – Signed professional forms on 3rd February 1960.
- Stan Edwards (Rhyl) – Signed professional forms on 16th December 1959.
- Roy Vernon (Blackburn Rovers) – Everton and Blackburn Rovers agreed an exchange deal where Everton received Roy Vernon and Blackburn received Eddie Thomas and £27,500.
Out
| Player | Team | Date | Fee |
|---|---|---|---|
| Johnny Clayton | Southport | July 1959 | £100 |
| Jackie Keeley | Accrington Stanley (1891) | 17 July 1959 | £1,000 |
| Allan Sanders | Swansea Town | 6 November 1959 | £5,000 |
| Dave Hickson | Liverpool | 6 November 1959 | £10,000 |
| Jackie Hood | Tranmere Rovers | 23 December 1959 | £100 |
| Eddie Thomas | Blackburn Rovers | 10 February 1960 | Exchange |
| Jimmy Blain | Southport | 11 February 1960 | £100 |
| Eddie O'Hara | Rotherham | 22 February 1960 | £3,500 |
| Total (initial fees only): | £19,800 | ||
- Johnny Clayton (Southport) – Transfer completed around 10th July 1959.
- Eddie Thomas (Blackburn Rovers) – Everton and Blackburn Rovers agreed an exchange deal where Everton received Roy Vernon and Blackburn received Eddie Thomas and £27,500.
| Income | £19,800 |
| Expenditure | £104,950 |
| Net Spend | +£85,150 |